Function reference • ARCOS

All functions
`ARCOS`	ARCOS: A package for Automatic Recognition of Collective Signalling
`arcosTS()`	Create an arcosTS class
`binMeas()`	"Smooth, de-trend, and binarise the measurement"
`calcFracActInColl()`	"Shuffle coordinates"
`calcGrowthColl()`	"Calculate collective events' growth"
`calcMoran()`	Global Moran's I spatial correlation
`calcNNdists()`	"Calculate NN distances"
`calcPvalFromBS()`	Calculate p-value from bootstrapping
`calcStatsColl()`	"Stats of collective events"
`clipMeas()`	"Clip the measurement"
`export2napari()`	"Export data to Napari"
`genSynthMultiple2D()`	Random synthetic collective events in 2D
`genSynthSingle2D()`	A single synthetic collective event in 2D
`getMinBBox2D()`	Rotating callipers algorithm in 2D
`histMeas()`	"Plot a histogram of the measurement"
`histTrackLen()`	"Plot a histogram of track lengths
`interpolMeas()`	Interpolate NAs and missing data
`is.arcosTS()`	"Test whether an object is the arcosTS object"
`is.arcosTS.fromBin()`	"Test whether the measurement in the arcosTS object has been binarised"
`is.arcosTS.fromBoot()`	"Test whether an arcosTS comes from bootstrapping"
`is.arcosTS.fromColl()`	"Test whether an arcosTS object has collective events"
`keepSignifDig()`	Keep significant digits
`loadDataFromFile()`	Load data from file
`loadDataFromImages()`	Title
`midPtCir()`	Mid-Point Circle Drawing Algorithm
`plotBinMeas()`	"Visualise measurement de-trending and binarisation"
`plotNoodle2D()`	"Plot collective events"
`plotTracks()`	"Plot tracks"
`randShiftMeas()`	"Randomly shift the measurement"
`rcpp_clip()`	Clip a numeric vector Clip a numeric vector between lower and upper bounds.
`runCollVis()`	Shiny app to visualise collective events
`savePlotColl2D()`	"Save plots of collective events"
`selColl()`	Select collective events
`selTrackLen()`	Select track lengths
`shifter()`	Vector shifter
`shuffBlockTrack()`	"Shuffle blocks of the measurement per track"
`shuffBlockVec()`	Block shuffle a binary vector
`shuffBlockVecAlt()`	Block shuffle a binary vector
`calcFracActInColl(<default>)` `shuffCoord()`	"Shuffle coordinates"
`shuffMeasFrame()`	"Shuffle the measurement per frame"
`shuffMeasTrack()`	"Shuffle the measurement per track"
`trackColl()`	"Track collective events"
`trackCollBoot()`	"Track collective events with bootstrapping randomisation"

Reference

All functions